| A Machine Learning Based Causal Interface for Time-Varying Environmental Predictors of Substance Use Initiation in the ABCD Study |
Wei, M. |
2026-07-25 |
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Background: The Adolescent Brain Cognitive Development (ABCD) Study offers rich longitudinal data on environmental, genetic, and other factors related to substance use initiation. Classical marginal structural models (MSMs) require choosing which covariates to include in propensity models, but this choice is difficult in the presence of hundreds of correlated predictors. Methods: We analyzed longitudinal data from the Adolescent Brain Cognitive Development Study using a European-ancestry unrelated cohort, where each individual contributed repeated observations over time. Interval level binary outcomes were defined for initiation of alcohol, nicotine, cannabis, and any substance, restricting analyses to participants at risk prior to initiation. All predictors were constructed as lagged variables to preserve temporal ordering. We implemented a two-stage machine learning based causal framework. First, we performed graph discovery using a Granger-inspired lagged predictive modeling approach, applying elastic-net logistic regression to identify predictive relationships between lagged environmental variables and future initiation outcomes. Robust candidate edges were selected using subject level bootstrap stability selection. Second, we estimated adjusted effect sizes for stable edges using DML-style partialling-out with cross-fitting. For each candidate predictor, we defined the treatment as the lagged variable of interest and adjusted for high dimensional lagged covariates. Cross fitting with group-based splitting accounted for within-subject dependence, and nuisance functions were estimated using random forest models. Cluster robust standard errors were used for inference. Results: Across analyses, behavioral and environmental predictors showed stronger and more consistent associations with substance use initiation than polygenic risk scores. In the graph discovery analysis, stable edges were mainly related to rule-breaking behavior, sensation seeking, resiliency, sleep, screen related measures, and family or parent related variables. PRS variables were less consistently selected and did not appear as dominant predictors. Cannabis initiation showed strong stable links with parent-reported rule breaking behavior and behavioral symptoms. Nicotine initiation was linked to sensation seeking, behavioral symptoms, and screen-related measures. DML style effect estimates were modest in magnitude but supported positive associations for several stable predictors, including rule breaking behavior for cannabis initiation and sensation seeking, BPM behavioral items, and screen-related measures for nicotine initiation. Conclusions: In this EUR unrelated cohort, adolescent substance-use initiation was more consistently associated with modifiable behavioral and environmental factors than with PRS variables. The findings suggest that cannabis and nicotine initiation share some risk factors but also have distinct predictor profiles. These results highlight the importance of longitudinal, multi method approaches for identifying early risk patterns and suggest that prevention strategies may benefit from focusing on behavioral regulation, sensation seeking, family context, sleep, and screen-related behaviors. |
| Dynamic and Baseline Multi-Task Learning for Predicting Substance Use Initiation in the ABCD Study |
Wei, M. |
2026-07-25 |
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Background: Substance use initiation during adolescence is a time-dependent process influenced by shared and substance-specific risk factors. Conventional single-outcome models may not capture nonlinear relationships, shared structure across outcomes, or changes in risk over time. We compared baseline and dynamic multi-task learning frameworks for predicting initiation of alcohol, nicotine, cannabis, and any substance use. Methods: We analyzed 2,366 unrelated participants of European genetic ancestry from the Adolescent Brain Cognitive Development Study release 5.1. A baseline multi-task learning model predicted initiation within 48 months using one record per participant. A dynamic discrete-time multi-task learning model used longitudinal interval records to estimate time-varying initiation risk. Both frameworks included environmental and behavioral exposures, core covariates, and polygenic risk scores. Performance was evaluated in a held-out test set using area under the receiver operating characteristic curve, precision-recall area under the curve, and calibration metrics. Multi-task models were compared with corresponding single-task logistic regression models. Permutation-based feature importance was compared across baseline and dynamic models and with Cox proportional hazards results. Results: Initiation rates were 40.7% for alcohol, 6.4% for nicotine, 4.2% for cannabis, and 43.4% for any substance use. Multi-task learning did not consistently outperform logistic regression across all outcomes. Its clearest gains were observed for the lower-prevalence nicotine and cannabis outcomes. Dynamic modeling generally improved prediction relative to baseline modeling, particularly for logistic regression and nicotine initiation, whereas baseline multi-task learning remained stronger for cannabis. Feature rankings showed moderate agreement between baseline and dynamic multi-task models but lower concordance between multi-task and Cox models. Behavioral and environmental predictors, particularly UPPS sensation seeking and parental monitoring, were more reproducible across frameworks than polygenic risk score features. Conclusions: Longitudinal discrete-time modeling provided the most consistent improvement in predicting adolescent substance use initiation, while the added value of multi-task learning varied by outcome and was most apparent for nicotine and cannabis. Combining baseline and dynamic analyses may help identify robust shared and substance-specific predictors while characterizing how risk changes over development. |
| Circulating protein profiling identifies prognostic biomarkers in amyotrophic lateral Sclerosis |
Klimovski, H. |
2026-07-25 |
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In the pathologically and clinically heterogeneous neurodegenerative disorder amyotrophic lateral sclerosis (ALS), objective biochemical predictors of survival are essential to handle complexity in clinical trials, enrich clinical decision-making and interrogate the biology of disease progression. In this longitudinal study, we performed high-depth proximity extension assay proteomics using 1,095 samples of serum (N=851) and CSF (N=244) from 426 people with ALS, with orthogonal replication in an external cohort of 349 people with ALS. Age- and sex-adjusted Cox analysis identified 57 proteins in serum, including neurofilament light chain (NEFL) and peripherin, as well as five proteins in CSF, including tropomyosin 3 (TPM3) that were associated with survival (FDR-adjusted p<0.05). Penalised Cox regression identified a panel of 9 serum proteins - including NEFL, peripherin, TNF receptor superfamily member 27 (EDA2R) and calcitonin - that reflect the extent of disease as well as the progression rate, improving survival prediction compared with models using clinical parameters and NEFL. Joint modelling identified associations between the longitudinal trajectories of serum EDA2R and calcitonin with survival, highlighting their potential role in measuring disease progression. This work indicates the utility of multiple proteins reflecting diverse biological pathways in refining survival stratification and highlights systemic factors in ALS progression. |
| CT-Based Deep Foundation Model for Predicting Immune Checkpoint Inhibitor-Induced Pneumonitis Risk in Lung Cancer |
Muneer, A. |
2026-07-25 |
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Background: Immune checkpoint inhibitors (ICIs) have revolutionized cancer therapy but can cause serious immune-related adverse events (irAEs), with pneumonitis (ICI-P) being among the most severe. Early identification of high-risk patients before ICI initiation is critical for close monitoring, timely intervention, and optimizing outcomes. Purpose: To develop and validate a deep learning foundation model to predict ICI-P from baseline CT scans in patients with lung cancer. Methods: We designed the Checkpoint-Inhibitor Pneumonitis Hazard EstimatoR (CIPHER), a deep learning-powered foundation model combining contrastive learning with a transformer-based masked autoencoder to predict ICI-P from baseline CT scans in lung cancer patients. Using self-supervised learning, CIPHER was pretrained on 590,284 CT slices from 2,500 non-small cell lung cancer (NSCLC) patients to learn representations of heterogeneous lung parenchyma. Following pretraining, CIPHER was adapted to the internal MDA NSCLC immunotherapy cohort of 347 patients, of whom 33 developed adjudicated ICI-P. Fine-tuning was performed using 254 non-ICI-P patients only, and a held-out internal validation set of 93 patients, including 33 ICI-P cases and 60 non-ICI-P controls, was reserved for evaluation. CIPHER was benchmarked against clinical, radiomics, and ensemble comparator models and externally validated in an independent Johns Hopkins NSCLC cohort of 116 patients, including 20 ICI-P cases and 96 non-ICI-P controls. Results: In our internal immunotherapy cohort, CIPHER consistently distinguished patients at elevated risk of ICI-P from those without the event, with AUCs ranging from 0.77 to 0.85. In head-to-head benchmarking, CIPHER achieved an AUC of 0.83, compared with 0.58 for the clinical model, 0.77 for the radiomics model, and 0.78 for the ensemble model. In the external validation cohort, CIPHER maintained high performance, AUC = 0.83 and balanced accuracy = 81.7%, exceeding the radiomics model, DeLong p = 0.0318, and showing substantially higher specificity than the radiomics model, 83.3% versus 45.8%, with sensitivity of 80.0%. Confusion matrix analyses showed that CIPHER correctly identified 80 of 96 non-ICI-P cases and 16 of 20 ICI-P cases. Conclusions: We developed and externally validated CIPHER, a CT-based imaging biomarker for pretreatment ICI-P risk stratification in NSCLC. CIPHER shows promise as a noninvasive tool for ICI-P risk assessment but warrants prospective validation before clinical translation. |
| Why More Doctors May Not Mean More Essential-Specialty Physicians |
Yu, H. |
2026-07-25 |
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BackgroundI present an illustrative conceptual model of how economic and legal disincentives may drive specialty and practice-setting misallocation in South Korean essential medicine, alongside--not instead of--aggregate workforce constraints, examined through the "Vital 5" specialties (Internal Medicine, General Surgery, Obstetrics & Gynecology, Pediatrics, and Cardiothoracic Surgery). MethodsI built two models: a Human-Capital Misallocation Cost model estimating resources lost when specialists work outside their training, and an Expected Value (E(V)) model of entry into essential fields incorporating Net Return (Rnet), Probability of Lawsuit during a practicing physicians lifetime (Psuit), and Cost of Risk (Crisk). All parameters are stated assumptions with sensitivity analyses. A national replacement-cost equivalent was derived from emergency-system expenditure per resident vacancy in the 2024 crisis and a mismatch rate taken directly from national data. ResultsNational data show a high proportion of cardiothoracic surgeons practicing outside their major field. Under the stated assumptions, expanding admissions dilutes Rnet and, through undertraining, raises Psuit; E(V) then declines and falls below zero only when litigation exposure is assumed to rise, remaining positive when it is held constant. The reversal therefore depends on the assumed expansion-litigation link, not on income dilution alone. ConclusionI propose, as a model-derived hypothesis, a "Paradox of Expansion": expanding quotas without addressing compensation and legal risk may reduce, rather than increase, active specialists in selected essential fields. I compare no alternative policies and identify no optimal policy; I argue only that quota expansion alone is unlikely to improve essential-specialty retention unless reimbursement and medico-legal risk are addressed concurrently. |
| Cardiovascular-Kidney-Metabolic Health in US Adults Under the 2026 Multisociety Guideline: Stage Redistribution From 1999 to 2023 and Population Burden Through 2050 |
Fu, F. |
2026-07-25 |
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Background The 2026 multisociety guideline frames cardiovascular, kidney, and metabolic health as a staged pathway. National surveillance should distinguish early-risk expansion from advanced-disease accumulation because they require different responses. Methods We analysed 66,553 adults aged 20 years or older across 11 non-overlapping National Health and Nutrition Examination Survey periods from 1999-2000 to August 2021-August 2023. Staging incorporated adiposity, glycaemia, metabolic risk, KDIGO kidney risk, PREVENT 10-year cardiovascular disease risk, and clinical cardiovascular disease. We estimated age-standardised prevalence and secular trends and projected population burden through 2050. Robustness analyses included complete-case estimation, alternative staging thresholds, exclusion of the latest survey period, and rolling temporal validation. Findings In 2021-2023, 88.5% (95% CI 87.2-89.9) of US adults were in stage 1 or higher, and 62.1% (59.9-64.4) were in stages 2-4. From 1999-2000 to 2021-2023, stage 0 decreased by 4.3 percentage points and stage 1 increased by 7.9 points, whereas stages 3-4 remained stable. Adiposity and diabetes increased, while hypertension and hypertriglyceridaemia declined. The prevalence of stages 2-4 ranged from 54.4% among college graduates to 69.6% among adults with less than a high-school education. Under population ageing alone, 189.5 million adults were projected to be in stages 2-4 by 2050. Rolling temporal validation yielded a mean absolute error of 1.6 percentage points. Interpretation The distribution of CKM stages in the US population shifted towards earlier metabolic risk without a parallel increase in advanced-stage disease. Policy should combine upstream prevention, equitable access to detection and treatment, and preparation for a growing older population requiring integrated care. |
| Circulating protein profiling identifies prognostic biomarkers in amyotrophic lateral Sclerosis |
Klimovski, H. |
2026-07-25 |
PDF |
In the pathologically and clinically heterogeneous neurodegenerative disorder amyotrophic lateral sclerosis (ALS), objective biochemical predictors of survival are essential to handle complexity in clinical trials, enrich clinical decision-making and interrogate the biology of disease progression. In this longitudinal study, we performed high-depth proximity extension assay proteomics using 1,095 samples of serum (N=851) and CSF (N=244) from 426 people with ALS, with orthogonal replication in an external cohort of 349 people with ALS. Age- and sex-adjusted Cox analysis identified 57 proteins in serum, including neurofilament light chain (NEFL) and peripherin, as well as five proteins in CSF, including tropomyosin 3 (TPM3) that were associated with survival (FDR-adjusted p<0.05). Penalised Cox regression identified a panel of 9 serum proteins - including NEFL, peripherin, TNF receptor superfamily member 27 (EDA2R) and calcitonin - that reflect the extent of disease as well as the progression rate, improving survival prediction compared with models using clinical parameters and NEFL. Joint modelling identified associations between the longitudinal trajectories of serum EDA2R and calcitonin with survival, highlighting their potential role in measuring disease progression. This work indicates the utility of multiple proteins reflecting diverse biological pathways in refining survival stratification and highlights systemic factors in ALS progression. |
| Operationalising the WHO call for integrated emergency care through a national ambulance alliance network: implementation experience and lessons from Addis Ababa, Ethiopia (PRECOS-1) |
Dula, P. K. |
2026-07-25 |
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Prehospital emergency care in many African cities is constrained not by ambulance scarcity but by fragmentation: multiple uncoordinated provider types operating parallel dispatch systems, with no shared data and no capacity to measure system performance. Despite the World Health Assembly's 2023 resolution on integrated emergency care (WHA 76.2) and Ethiopia's Health Sector Transformation Plan II (HSTP-II), prehospital coordination has remained a critical missing link. In response, Ethiopia developed the Hospital Emergency Assistance and Response Tracking System (HEARTS) under the Ethiopian Ambulance Alliance Network (EAAN), a governed, multi-provider federation established through consultation with the Network for Perioperative and Critical Care (N4PCc), Federal Ministry of Health, the Addis Ababa city administration fire and disaster response team, a humanitarian NGO provider, and dedicated private ambulance providers. HEARTS provides real-time fleet tracking, unified call processing, community access via a dedicated mobile application, and performance dashboards disaggregated by sub-city and provider type. This paper reports the first phase of the Prehospital Care Outcome Study (PRECOS-1), a programmatic research platform established to generate longitudinal evidence on prehospital coordination in Ethiopia and to inform replication across Africa. During the first operational phase in Addis Ababa (December 2025 to June 2026), HEARTS coordinated 1,403 trips across four provider types and 59 response units. The majority of trips were high- or critical-acuity (63.3%), with maternal and obstetric presentations forming the largest clinical category (44.3%). Median response time was 14.5 minutes (IQR 5.8 to 27.0; 90th percentile 75.0 minutes), the first unified prehospital performance baseline for this city. These findings demonstrate that a coordination-first approach to prehospital system strengthening is feasible in a fragmented low- and middle-income country setting, generate the measurement infrastructure for future improvement studies (PRECOS-2 onward), and offer a replicable model for African cities pursuing integrated emergency care. |
| Pre-migratory, Migratory and Post-migratory Factors Associated with Risky Sexual Behaviour among Women Informal Cross-Border Traders at the COMESA Market, Lusaka, Zambia |
Mwale, S. |
2026-07-25 |
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Women engaged in informal cross-border trade in Southern Africa experience frequent mobility, economic pressure, and exposure to new social environments that may increase vulnerability to risky sexual behaviour and HIV. Limited evidence exists on how pre-migratory, migratory, and post-migratory factors interact to shape sexual risk among this population. This study examined the prevalence and determinants of risky sexual behaviour among women informal cross-border traders at COMESA Market in Lusaka, Zambia. A cross-sectional survey was conducted with 499 women informal cross-border traders. A composite risk score was used to classify respondents as "low risk" or "high risk" for sexual behaviour. Descriptive statistics, chi-square tests, and multivariate binary logistic regression were used to investigate associations between selected covariates and risky sexual behaviour, guided by migration and vulnerability theory. The majority (67.7%) of respondents were classified as high-risk. In multivariate analysis, women who used personal savings for start-up capital were 73% less likely to be high-risk compared to those relying on nuclear family capital (aOR = 0.27, 95% CI: 0.10-0.73). Women with 5-9 years of trading experience also had lower odds (aOR = 0.21, 95% CI: 0.29-0.96). Conversely, using Katima Mulilo border increased the odds 15-fold (aOR = 14.59, 95% CI: 1.26-169.50). Not feeling disconnected while away (aOR = 3.39, 95% CI: 1.03-11.11) and sharing accommodation with one roommate (aOR = 4.42, 95% CI: 1.10-17.84) were also significant predictors of high-risk behaviour. This study demonstrates that risk among women informal cross-border traders is produced across the migration continuum by economic dependence, specific transit routes, and destination living conditions. Interventions should therefore prioritise financial independence, targeted health and protection services at high-risk borders, and safe accommodation with peer-led HIV prevention to reduce vulnerability among mobile women traders. |
| Two to Tango: Are Spouses' Perception of Women's Empowerment Associated with Concordance on Fertility Desires? |
Kumari, B. |
2026-07-25 |
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Introduction The current study examined the association between husbands' and wives' perceptions of women's empowerment, focusing on household decision-making, attitudes toward IPV, and fertility desires in Pakistan. Methods Data from currently married couples participating in the Pakistan DHS (2017-18) were included in the analysis (n=3,027). The level of concordance on fertility desires was assessed using Kappa Coefficient. Principal component analysis (PCA) was applied to assess the internal consistency and dimensionality of household decision-making and IPV attitude items; items within each construct were subsequently summed to generate categorical empowerment scores used in the regression analyses. Relative risk ratios were estimated for perceived empowerment on spousal concordance on fertility desires using multinomial logistic regressions. Results The study found a moderate level of spousal agreement on fertility desires (Kappa=0.51). Among significant findings: wife's perception of her own high decision-making authority was associated with more than a two-fold increase in wife-only discordance (wife wanting more children, husband wanting no more), compared to both spouses wanting more children. Conclusion The study contributes to the understanding of couple's gendered dynamics and how they may influence fertility desires. Such knowledge informs efforts to increase both spouses' involvement in reproductive decision-making and behaviors. |